Problem 3. Answer the following questions. a. Search for any DNA nucleotide sequ

Question

Problem 3. Answer the following questions. a. Search for any DNA nucleotide sequence in GenBank with at least 1000 base pairs supporting this sequence submission to GenBank. b. Using this DNA nucleotide sequence and Python, calculate the following: i. Empirical probabilities (relative frequencies) for all possible single nucleotides in the sequence ii. GC content ii. GC-skewness plots using sliding window sizes of 10 bp and 100bp. (Note: the formula provided in class is calculated for every window) iv. Conditional probabilities matrix (probability of one nucleotide value at position given a nucleotide value at position t - 1) v. Empirical probabilities (relative frequencies) for all possible dinucleotides in the sequence

Explanation / Answer

            genes, complete cds.

iv) Number of reference: 9

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