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1. In a population of 2000 Gaboon vipers (Bitis gabonica), a genetic difference

ID: 145307 • Letter: 1

Question

1. In a population of 2000 Gaboon vipers (Bitis gabonica), a genetic difference with respect to venom exists at a single locus that controls venom production. The alleles are incompletely dominant. The population shows 150 individuals homozygous for the t allele (genotype tt, non-venomous), 750 heterozygous (genotype Tt, mildly venomous), and 1100 homozygous for the Tallele (genotype TT, lethally venomous). (3 pt) a. What is the frequency of the t allele in the population? (Show Work) (2 places after decimal) b. Are the genotypes in Hardy-Weinberg equilibrium? Why or why not? (Show work) HINT: Use Chi-Square Table and Calculate Degrees of freedom as (# Genotypes-#Alleles Possible-DF.

Explanation / Answer

Phenotype

Lethally Venomous

Mildly Venomous

Non venomous

Total

Genotype

TT

Tt

tt

Number of individuals

1100

750

150

2000

Observed genotype frequencies

1100/2000=0.55

750/2000=0.38

150/2000=0.08

=1.0

Allele frequencies

p=0.74

q= 0.26

=1.0

Expected genotype frequencies

0.54

0.39

0.07

=1.0

For Allele Frequencies:

There are two T alleles in TT = 1100 * 2= 2200

There are one T alleles in Tt= 750

Total number of alleles= 2* 1000+2* 750+2*150=4000

Frequency of allele T = p= Total number of alleles that are dominant/Total number of alleles= 2200+750/2000+2000= = 0.7375

Frequency of allele t = q= 1-p= 1-0.7375=0.2625

For Expected Frequencies:

The Hardy Weinberg equation is given as:

p2+2pq+q2=1

p2 = frequency of the homozygous genotype TT, q2 = the frequency of the homozygous genotype tt, and 2pq = frequency of the heterozygous genotype Tt.

Expected frequency of TT= p2= 0.7375*0.7375= 0.5439

Expected frequency of Tt= 2pq= 2X 0.7375 X 0.2625= 0.3872

Expected frequency of tt= q2= 0.2625 X 0.2625= 0.0689

Question a:

Frequency of allele T = p= 2200+750/2000+2000= = 0.7375= 0.74

Frequency of allele t = q= 1-p= 1-0.74=0.26

Frequency of t allele in population =q= 0.26

Question b:

Chi-Square test:

Null Hypothesis: the frequencies are in Hardy-Weinberg equilibrium

Observed

Expected

(O-E)

(O-E)2

(O-E)2/E

TT

0.55

0.54

0.01

0.0001

0.000185

Tt

0.38

0.39

-0.01

0.0001

0.000256

tt

0.08

0.07

0.01

1E-04

0.001429

Total

0.9997

1

0.01

0.0003

0.00187

Degree of freedom= Number of genotypes-Number of alleles= 3-2=1

Probability of chi square at d.f 2= 0.89= 89%

A Chi Square value between 1%-5% should allow you to reject the null hypothesis. However, 89% is a large P Value. Hence, the null hypothesis is accepted. The frequencies are in Hardy-Weinberg equilibrium.

Phenotype

Lethally Venomous

Mildly Venomous

Non venomous

Total

Genotype

TT

Tt

tt

Number of individuals

1100

750

150

2000

Observed genotype frequencies

1100/2000=0.55

750/2000=0.38

150/2000=0.08

=1.0

Allele frequencies

p=0.74

q= 0.26

=1.0

Expected genotype frequencies

0.54

0.39

0.07

=1.0